Projects

GENETIC FOUNDATIONS FOR BIOENERGY FEEDSTOCKS Appropriated (D)   Accession Number: 418493

RESEQUENCING DIVERSE GENOTYPES OF BRACHYPODIUM DISTACHYON, A TRACTABLE MODEL GRASS SPECIES Nonfunded Cooperative Agreement (N)   Accession Number: 411327

INSERTIONAL MUTAGENESIS OF BRACHYPODIUM DISTACHYON Reimbursable (R)   Accession Number: 412354

PHENOMIC ANALYSIS OF NATURAL AND INDUCED VARIATION IN BRACHYPODIUM DISTACHYON Reimbursable (R)   Accession Number: 418227

Publications

A Genetic Linkage Map of the Model Grass Brachypodium distachyon - (Peer Reviewed Journal) - (24-Sep-09)

Molecular, morphological and cytological analysis of diverse Brachypodium distachyon inbred lines - (Peer Reviewed Journal) - (28-Jul-09)

Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon - (Peer Reviewed Journal)

Vogel, J.P., Metin, T., Budak, H., Huo, N., Gu, Y.Q., Steinwand, M.A. 2009. Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon Biomed Central (BMC) Plant Biology. 9:Article 88. Available: http://www.biomedcentral.com/1471-2229/9/88/abstract

Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat - (Peer Reviewed Journal)

Huo, N., Vogel, J.P., Lazo, G.R., You, F., Ma, Y., McMahon, S.A., Dvorak, J., Anderson, O.D., Luo, M., Gu, Y.Q. 2009. Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat. Plant Molecular Biology. 70: 47-61.

Brachypodium distachyon, a New Model for the Grasses - (Book/Chapter) - (25-Mar-08)

Unique aspects of the grass cell wall - (Review Article)

Vogel, J.P. 2008. Unique aspects of the grass cell wall. Current Opinion in Plant Biology. 11:301-307.

High-efficiency Agrobacterium-mediated transformation of Brachypodium distachyon inbred line Bd 21-3 - (Peer Reviewed Journal)

Vogel, J.P., Hill, T.A. 2007. High-efficiency Agrobacterium-mediated transformation of Brachypodium distachyon inbred line Bd 21-3. Plant Cell Reports. 27:471-478

Characterizing the nuclear genome structure of Brachypodium distachyon using BAC end sequences. - (Peer Reviewed Journal)

Huo, N., Lazo, G.R., Vogel, J.P., You, F., Ma, Y., Hayden, D.M., Coleman-Derr, D., Hill, T., Dvorak, J., Anderson, O.D., Luo, M., Gu, Y.Q. 2007. Characterizing the nuclear genome structure of Brachypodium distachyon using BAC end sequences. Functional and Integrative Genomics. 8:135-147.

Development of genetic and genomic research resources for Brachypodium distachyon, a new model system for grass crop research - (Peer Reviewed Journal)

Garvin, D.F., Gu, Y.Q., Hasterok, R., Hazen, S.P., Jenkins, G., Mockler, T.C., Mur, L.A., Vogel, J.P. 2008. Development of genetic and genomic research resources for Brachypodium distachyon, a new model system for grass crop research. The Plant Genome. 48:S69-S84.

Edr2 Negatively Regulates Salicylic Acid-Based Defenses and Cell Death During Powdery Mildew Infections of Arabidopsis Thaliana - (Peer Reviewed Journal)

Vorwerk, S., Schiff, C., Santamaria, M., Koh, S., Nishimura, M., Vogel, J., Somerville, C., Somerville, S. 2007 EDR2 negatively regulates salicylic acid-based defenses and cell death during powdery mildew infections of Arabidopsis thaliana. BMC Plant Biology. 7: Issue 35 (on-line journal).

Construction and Characterization of Two Bac Libraries from Brachypodium Distachypon, a New Model for Grass Genomics - (Peer Reviewed Journal)

Gu, Y., Lazo, G., Vogel, J., Coleman-Derr, D., Luo, M.C., Thilmony, R., Garvin, D., Anderson, O., Huo, N. 2006. Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics. Genome. 49(9):1099-1108.

Conserved Requirement for a Plant Host Cell Protein in Powdery Mildew Pathogenesis - (Peer Reviewed Journal)

Consonni, C., Humphry, M., Hartmann, A., Livaja, M., Durner, J., Westphal, L., Vogel, J.P., Lipka, V., Kemmerling, B., Schulze, L., Somerville, S., Panstruga, R. 2006. Conserved requirement for a plant host cell protein in powdery mildew pathogenesis. Nature Genetics. 38:716-720.

Est Sequencing and Phylogenetic Analysis of the Model Grass Brachypodium Distachyon - (Peer Reviewed Journal)

Vogel, J.P., Gu, Y.Q., Twigg, P., Lazo, G.R., Chingcuanco, D.L., Hayden, D.M., Donze, T., Vivia-Lindsay, A., Stamova, B., Coleman-Derr, D. 2006. EST sequencing and phylogenetic analysis of the model grass brachypodium distachyon. Theoretical and Applied Genetics. 113: 186-195.

Agrobacterium-Mediated Transformation and Inbred Line Development in the Model Grass Brachypodium Distachyon. - (Peer Reviewed Journal)

Vogel, J.P., Garvin, D.F., Leong, O.M., Hayden, D.M. 2006. Agrobacterium-mediated transformation and inbred line development in the model grass brachypodium distachyon. Plant Cell Tissue And Organ Culture. 84:199-211.

Mutations in Pmr5 Result in Powdery Mildew Resistance and Altered Cell Wall Composition. - (Peer Reviewed Journal)

Vogel, J.P., Raab, T.K., Somerville, S.C. 2004. Mutations in pmr5 result in powdery mildew resistance and altered cell wall composition. Plant Journal. 40:968-978.

Agrobacterium-Mediated Transformation of the Model Grass Brachypodium Distachyon - (Abstract)

Vogel, J.P., Leong, O.M. 2004. Agrobacterium-mediated transformation of the model grass Brachypodium distachyon (abstract). 2004. In Vitro Cellular and Developmental Biology. 40:29A.

Loss of a Callose Synthase Results in Salicylic Acid Dependent Disease Resistance. - (Peer Reviewed Journal)

Nishimura, M.T., Stein, M., Hou, B., Vogel, J.P., Edwards, H., Somerville, S.C. 2003. Loss of a callose synthase results in salicylic acid dependent disease resistance. Science. 301:969-972.