Publications (Clicking on the reprint icon will take you to the publication reprint.)

Evidence of norovirus (NV)in a major produce production region watershed and a low density microarray strategy for detecting NV(Abstract) - (Abstract Only) - (25-Oct-12)

Using MOMP typing as an epidemiological tool to investigate outbreaks caused by milkborne Campylobacter jejuni isolates in California - (Peer Reviewed Journal)

Jay-Russell, .T., Mandrell, R.E., Yuan, J., Bates, A.H., Manalac, R., Mohle-Boetani, J., Kimura, A., Lidgard, J., Miller, W.G. 2012. Using MOMP typing as an epidemiologic tool to investigate milkborne Campylobacter jejuni outbreaks in California. Journal of Clinical Microbiology. 51(1):195-201.

Genome sequence of E. coli O104:H4 leads to rapid development of a targeted antimicrobial agent against this emerging pathogen. - (Peer Reviewed Journal)

Scholl, D., Gebhart, D., Williams, S., Bates, A.H., Mandrell, R.E. 2012. Genome sequence of E. coli O104:H4 leads to rapid development of a targeted antimicrobial agent against this emerging pathogen. PLoS One. 7(3):e33637.doi:10.1371/journal.pone.0033637.

Isolation of Campylobacter from feral swine (Sus scrofa) on the ranch associated with the 2006 Escherichia coli O157:H7 spinach outbreak investigation in California - (Peer Reviewed Journal)

Jay-Russell, M.J., Bates, A.H., Harden, L.A., Miller, W.G., Mandrell, R.E. 2012. Isolation of Campylobacter from feral swine (Sus scrofa) on the ranch associated with the 2006 Escherichia coli O157:H7 spinach outbreak investigation in California. Zoonoses and Public Health. 10.1111/j.1863-2378.2012.01465.x.

Curli variants of enterohemorrhagic Escherichia coli O157:H7 display distinct survival fitness - (Peer Reviewed Journal)

Carter, M.Q., Brandl, M., Louie, J.W., Kyle, J.L., Carychao, D.K., Cooley, M.B., Parker, C., Bates, A.H., Mandrell, R.E. 2011. Curli variants of enterohemorrhagic Escherichia coli O157:H7 display distinct survival fitness. Applied and Environmental Microbiology. 77:3685-3695.

Rapid Identification of Protein Biomarkers of E. coli O157:H7 by MALDI-TOF-TOF Mass Spectrometry and Top-Down Proteomics - (Peer Reviewed Journal)

Fagerquist, C.K., Garbus, B.R., Miller, W.G., Williams, K.E., Yee, E., Bates, A.H., Boyle, S., Harden, L.A., Cooley, M.B., Mandrell, R.E. 2010. Rapid Identification of Protein Biomarkers of E. coli O157:H7 by MALDI-TOF-TOF Mass Spectrometry and Top-Down Proteomics. Analytical Chemistry. 82:2717-2725.

Phenotypic Divergence in Curli Variants of Enterohemorrhagic Escherichia coli O157:H7 - (Abstract Only) - (04-Mar-10)

Covalent attachment and dissociative loss of sinapinic acid to/from cysteine-containing proteins from bacterial cell lysates analyzed by MALDI-TOF-TOF mass spectrometry - (Peer Reviewed Journal)

Fagerquist, C.K., Garbus, B., Williams, K., Bates, A.H., Harden, L.A. 2010. Covalent attachment and dissociative loss of sinapinic acid to/from cysteine-containing proteins from bacterial cell lysates analyzed by MALDI-TOF-TOF mass spectrometry. Journal of American Society for Mass Spectrometry. 21,819-832.

Rapid Identification of E. coli O157:H7 by "Top-Down" Proteomics Using MALDI-TOF/TOF Mass Spectrometry - (Proceedings)

Fagerquist, C.K., Garbus, B.R., Williams, K.E., Bates, A.H., Boyle, S., Harden, L.A., Miller, W.G., Mandrell, R.E. 2009. Rapid Identification of E. coli O157:H7 by "Top-Down" Proteomics Using MALDI-TOF/TOF Mass Spectrometry.IN: Proceedings of the 57th American Society of Mass Spectrometry Conference, May 31-June 4, 2009, Philadelphia, PA. DVD:A091307.8125ver.1.pdf

Web-based software for rapid "top-down" proteomic identification of protein biomarkers with implications for bacterial identification - (Peer Reviewed Journal)

Fagerquist, C.K., Garbus, B.R., Williams, K., Bates, A.H., Boyle, S., Harden, L.A. 2009. Web-based software for rapid "top-down" proteomic identification of protein biomarkers with implications for bacterial identification. Applied and Environmental Microbiology. 75(13):4341-4353.

An Engineered R-Type Pyocin Is a Highly Specific and Sensitive Bactericidal Agent for the Food-Borne Pathogen Escherichia coli O157:H7 - (Peer Reviewed Journal)

Scholl, D., Cooley, M.B., Williams, S.R., Gebhart, D., Martin, D., Bates, A.H., Mandrell, R.E. 2009. An Engineered R-Type Pyocin Is a Highly Specific and Sensitive Bactericidal Agent for the Food-Borne Pathogen Escherichia coli O157:H7. Antimicrobial Agents and Chemotherapy. 53(7):3074-3080.

Rapid Identification of E. coli O157:H7 by "Top-Down" Proteomics Using MALDI-TOF/TOF Mass Spectrometry - (Abstract Only) - (10-Mar-09)

Autoinducer-2 production in Campylobacter jejuni contributes to chicken colonization - (Peer Reviewed Journal)

Quinones, B., Miller, W.G., Bates, A.H., Mandrell, R.E. 2009. Autoinducer-2 production in Campylobacter jejuni contributes to chicken colonization. Applied and Environmental Microbiology. 75/1:281-285

High Resolution Genotyping of Campylobacter Using PCR and High-Throughput Mass Spectrometry - (Peer Reviewed Journal)

Hannis, J., Manalili, S., Hall, T., Ranken, R., White, N., Sampath, R., Blyn, L., Ecker, D., Mandrell, R.E., Fagerquist, C.K., Bates, A.H., Miller, W.G., Hofstadler, S. 2008. High Resolution Genotyping of Campylobacter Using PCR and High-Throughput Mass Spectrometry. Journal of Clinical Microbiology.46(4) 1220-1225.

AI-2 signaling in Campylobacter jejuni and its contribution to chicken colonization - (Proceedings) - (15-Aug-07)

Identification of Foodborne Bacteria by High Energy Collision-Induced Dissociation of Their Protein Biomarkers by MALDI Tandem-Time-of-Flight Mass Spectrometry - (Proceedings)

Fagerquist, C.K., Williams, K.E., Bates, A. H. Identification of Foodborne Bacteria by High Energy Collision-Induced Dissociation of their Protein Biomarkers by MALDI Tandem-Time-of-Flight Mass Spectrometry. In: Proceedings of the 55th American Society of Mass Spectrometry Conference, June 3-7, 2007, Indianapolis, IN. [DVD MPT-327 from ASMS.]

BINDING OF RECOMBINANT NOROVIRUS LIKE PARTICLE TO HISTO-BLOOD GROUP ANTIGEN ON CELLS IN THE LUMEN OF PIG DUODENUM - (Peer Reviewed Journal)

Tian, P., Jiang, X., Zhong, W., Jensen, H., Brandl, M., Bates, A.H., Engelbrektson, A.L., Mandrell, R.E. 2007. Binding of recombinant norovirus like particle to histo-blood group antigen on cells in the lumen of pig duodenum. Research in Veterinary Science. 83(3) 410-418

SUB-SPECIATING CAMPYLOBACTER JEJUNI BY PROTEOMIC ANALYSIS OF ITS PROTEIN BIOMARKERS AND THEIR POST-TRANSLATIONAL MODIFICATIONS - (Peer Reviewed Journal)

Fagerquist, C.K., Bates, A.H., Heath, S., King, B.C., Garbus, B.R., Harden, L.A., Miller, W.G. Sub-speciating campylobacter jejuni by proteomic analysis of its protein biomarkers and their post-translational modifications. Journal of Proteome Research. 5:10:2527-2538

NOROVIRUS BINDS TO BLOOD GROUP A-LIKE ANTIGENS IN OYSTER GASTROINTESTINAL CELLS - (Peer Reviewed Journal)

Tian, P., Bates, A.H., Jensen, H., Mandrell, R.E. 2006. Norovirus binds to blood group a-like antigens in oyster gastrointestinal cells. Letters in Applied Microbiology. 43:645-651

SPECIATION OF CAMPYLOBACTER COLI, C. JEJUNI, C. HELVETICUS, C. LARI, C. SPUTORUM, AND C. UPSALIENSIS BY MATRIX-ASSISTED LASER DESORPTION IONIZATION-TIME OF FLIGHT (MALDI-TOF) MASS SPECTROMETRY - (Peer Reviewed Journal)

Mandrell, R.E., Harden, L.A., Bates, A.H., Miller, W.G., Haddon, W.F., Fagerquist, C.K. 2005. Speciation of campylobacter coli, c. jejuni, c. helveticus, c. lari, c. sputorum, and c. upsaliensis by matrix-assisted laser desorption ionization-time of flight (maldi-tof) mass spectrometry. Applied and Environmental Microbiology. 71:10 p. 6292-6307

GENOMIC AND PROTEOMIC IDENTIFICATION OF A DNA-BINDING PROTEIN USED IN THE "FINGERPRINTING" OF CAMPYLOBACTER SPECIES AND STRAINS BY MALDI-TOF-MS PROTEIN BIOMARKER ANALYSIS - (Peer Reviewed Journal)

Fagerquist, C.K., Miller, W.G., Harden, L.A., Bates, A.H., Vensel, W.H., Wang, G., Mandrell, R.E. 2005. Genomic and proteomic identification of a dna-binding protein used in the "fingerprinting" of campylobacter species and strains by maldi-tof-ms protein biomarker analysis. Analytical Chemistry. web release 6/25/05, 77:4897-4907

PRODUCTION OF AUTOINDUCER-2 IN SALMONELLA ENTERICA SEROVAR THOMPSON CONTRIBUTES TO ITS FITNESS IN CHICKENS BUT NOT ON CILANTRO PLANT LEAF SURFACES - (Peer Reviewed Journal)

Brandl, M., Miller, W.G., Bates, A.H., Mandrell, R.E. 2005. Production of autoinducer-2 in salmonella enterica serovar thompson contributes to its fitness in chickens but not on cilantro plant leaf surfaces. Applied and Environmental Microbiology. 71(5):2653-2662.

COMPARISON OF SURVIVAL OF CAMPYLOBACTER JEJUNI IN THE PHYLLOSPHERE WITH THAT IN THE RHIZOSPHERE OF SPINACH AND RADISH PLANTS. - (Peer Reviewed Journal)

BRANDL, M., HAXO, A.F., BATES, A.H., MANDRELL, R.E. 2004. COMPARISON OF SURVIVAL OF CAMPYLOBACTER JEJUNI IN THE PHYLLOSPHERE WITH THAT IN THE RHIZOSPHERE OF SPINACH AND RADISH PLANTS. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 70:1182-1189.

IMMUNOASSAYS FOR BOWMAN-BIRK AND KUNITZ SOYBEAN TRYPSIN INHIBITORS IN INFANT FORMULA - (Peer Reviewed Journal)

Brandon, D.L., Bates, A.H., Friedman, M. 2004. Immunoassays for Bowman-Birk and Kunitz soybean trypsin inhibitors in infant formula. Journal of Food Science. 69(1):45-49.

MONOCLONAL ANTIBODY TO FENBENDAZOLE: UTILITY IN RESIDUE STUDIES - (Peer Reviewed Journal)

Brandon, D.L., Bates, A.H., Binder, R.G., Montague Jr, W.C. 2002. Monoclonal antibody to fenbendazole: utility in residue studies. Food and Agricultural Immunology. 14(4):275-283.

MONOCLONAL ANTIBODY TO FENBENDAZOLE: UTILITY IN RESIDUE STUDIES - (Peer Reviewed Journal)

Brandon, D.L., Bates, A.H., Montague Jr, W.C. 2002. Monoclonal antibody to fenbendazole: utility in residue studies. Food and Agricultural Immunology. 14:275-283.

ANALYSIS OF FENBENDAZOLE RESIDUES IN BOVINE MILK BY ELISA - (Peer Reviewed Journal)

Brandon, D.L., Bates, A.H., Binder, R.G., Montague Jr., W.C., Whitehand, L.C., Barker, S.A. 2002. Analysis of fenbendazole residues in bovine milk by elisa. Journal of Agricultural and Food Chemistry. 50:5791-5796.

IMMUNOCHEMICAL APPROACHES TO FOOD SAFETY RESEARCH - (Other)

Brandon, D.L., Montague, W.C., Binder, R.G., Bates, A.H., Mandrell, R.E., Friedman, M. 2002. Immunochemical approaches to food safety research. Proceedings, Third Joint CSL/JIFSAN Symposium on Food Safety and Nutrition, 26-28 June 2002, York, UK. [Not Paginated]

BIOSENSOR STRATEGIES FOR FOODBORNE PATHOGENS - (Proceedings)

Brandon, D.L., Bates, A.H., Mandrell, R.E., Elliott, C.E. 2001. Biosensor strategies for foodborne pathogens. Proceedings for 115th AOAC International Meeting, 9-13 Sept. 2001, Kansas City, MO. Abstract No. 1501.