Projects

CURATION AND DEVELOPMENT OF THE SOYBEAN BREEDER'S TOOLBOX AND ITS INTEGRATION WITH OTHER PLANT GENOME DATABASES Appropriated (D)   Accession Number: 413173

Publications

Integrating Microarray Analysis and the Soybean Genome to Understand the Soybean's Iron Deficiency Response - (Peer Reviewed Journal)

O'Rourke, J.A., Nelson, R., Grant, D.M., Schmutz, J., Grimwald, J., Cannon, S.B., Vance, C.P., Graham, M.A., Shoemaker, R.C. 2009. Integrating Microarray Analysis and the Soybean Genome to Understand the Soybean's Iron Deficiency Response. Biomed Central(BMC)Genomics. 10:376. Available: http://www.biomedcentral.com/1471-2164/10/376.

The Soybean Breeder¿s Toolbox: Updated Features and New Data - (Abstract) - (20-Jul-08)

Microsatellite Discovery from BAC End Sequences and Genetic Mapping to Anchor the Soybean Physical and Genetic Maps - (Peer Reviewed Journal)

Shoemaker, R.C., Grant, D.M., Olson, T., Warren, W.C., Wing, R., Yu, Y., Kim, H., Cregan, P.B., Joseph, B., Futrell-Griggs, M., Nelson, W., Davito, J., Walker, J., Wallis, J., Kremitski, C., Scheer, D., Clifton, S., Graves, T., Nguyen, H., Wu, X., Luo, M., Dvorak, J., Nelson, R., Cannon, S.B., Thomkins, J., Schmutz, J., Stacey, G., Jackson, S. 2008. Microsatellite Discovery from BAC End Sequences and Genetic Mapping to Anchor the Soybean Physical and Genetic Maps. Genome. 51:294-302.

Cel_interrogator: a Free and Open Source Package for Affymetrix Cel File Parsing - (Abstract)

Nelson, R., Shoemaker, R.C. 2008. Cel_interrogator: a free and open source package for affymetrix cel file parsing [abstract]. Plant and Animal Genome Conference. Paper No. P867.

Gene Duplication and Paleopolyploidy in Soybean and the Implications for Whole Genome Sequencing - (Peer Reviewed Journal)

Schlueter, J., Lin, J., Schlueter, S., Vasylenko-Sanders, I., Deshpandem, S., Yi, J., O'Bleness, M., Roe, B., Nelson, R., Scheffler, B.E., Jackson, S., Shoemaker, R.C. 2007. Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing. Biomed Central (BMC) Genomics. 8:330.

Bioinformatic Resources for Soybean Genetic and Genomic Research - (Book/Chapter)

Grant, D.M., Nelson, R., Graham, M.A., Shoemaker, R.C. 2008. Bioinformatic resources for soybean genetic and genomic research. In: Stacey, Gary, editor. Genetics and Genomics of Soybean. New York, New York. Springer. p. 141-162.

Biphasic Responses of Resistant and Susceptible Soybean Plants to Soybean Rust, Phakopsora Pachyrhizi - (Peer Reviewed Journal)

Van De Mortel, M., Recknor, J.C., Graham, M.A., Nettleton, D., Dittman, J., Nelson, R., Godoy, C.V., Abdelnoor, R.V., Almeida, A.M., Baum, T.J., Whitham, S.A. 2007. Biphasic responses of resistant and susceptible soybean plants to soybean rust, Phakopsora pachyrhizi. Molecular Plant-Microbe Interactions. 20:887-899.

The Soybean Breeder's Toolbox: Integration of Genetic and Molecular Data for Soybean - (Abstract)

Nelson, R., Grant, D.M., Shoemaker, R.C. 2007. The soybean breeder's toolbox: integration of genetic and molecular data for soybean [abstract]. Plant and Animal Genome Conference. Paper No. P851.

Identification and Analysis of Gene Families from the Duplicated Genome of Soybean Using EST Sequences - (Peer Reviewed Journal)

Nelson, R., Shoemaker, R.C. 2006. Identification and Analysis of Gene Families from the Duplicated Genome of Soybean Using EST Sequences. Biomed Central (BMC) Genomics. 7:204.

The Soybean Breeder's Toolbox: a New Resource for Soybean Genetic and Genomic Information - (Abstract)

Nelson, R., Grant, D.M., Shoemaker, R.C. 2006. The soybean breeder's toolbox: a new resource for soybean genetic and genomic information [abstract]. Biennial Conference on Molecular and Cellular Biology of the Soybean. p. 4.

Preliminary Analysis of Single Nucleotide Polymorphisms in Soybean Detected B Estminer Analysis - (Abstract)

Nelson, R., Grant, D.M., Shoemaker, R.C. 2005. Preliminary analysis of single nucleotide polymorphisms in soybean detected b estminer analysis. Plant and Animal Genome Abstracts. p. 433.

The Legume Information Resource (Lis): An Integrated Information Resource for Comparative Legume Biology - (Abstract)

Gonzales, M.D., Beavis, B., Gajendran, K., Farmer, A., Archuletal, E., Grant, D.M., Nelson, R., Shoemaker, R.C., Waugh, M. 2005. The legume information resource (lis): an integrated information resource for comparative legume biology. Plant and Animal Genome Abstracts. p. 873.

Estminer: a Suite of Programs for Gene and Allele Identification - (Peer Reviewed Journal)

Nelson, R., Grant, D.M., Shoemaker, R.C. 2004. Estminer: a suite of programs for gene and allele identification. Bioinformatics. 21(5):691-693.