Projects

MOLECULAR MECHANISMS OF RESISTANCE TO WHEAT FUNGAL PATHOGENS Appropriated (D)   Accession Number: 423011

MOLECULAR MECHANISMS OF PLANT PATHOGEN INTERACTIONS IN CEREAL CROPS Appropriated (D)   Accession Number: 423051

Publications (Clicking on the reprint icon will take you to the publication reprint.)

A Perl script for targeted local genome assembly - (Abstract Only)

Crane, C.F., Nemacheck, J.A., Subramanyam, S., Williams, C.E. 2012. A Perl script for targeted local genome assembly. Plant and Animal Genome Conference Proceedings. PO981.

Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis - (Peer Reviewed Journal)

Goodwin, S.B., M'Barek, S., Dhillon, B., Wittenberg, A.J., Crane, C.F., Van Der Lee, T.J., Grimwood, J., Aerts, A., Antoniw, J., Bailey, A., Bluhm, B., Bowler, J., Bristow, J., Canto-Canche, B., Churchill, A., Conde-Ferraez, L., Cools, H., Coutinho, P.M., Csukai, M., Dehal, P., De Wit, P., Donzelli, B., Foster, A.J., Hammond-Kosack, K., Hane, J., Henrissat, B., Killian, A., Koopmann, E., Kourmpetis, Y., Kuzniar, A., Lindquist, E., Lombard, V., Maliepaard, C., Martins, N., Mahrabi, R., Oliver, R., Ponomarenko, A., Rudd, J., Salamov, A., Schmutz, J., Schouten, H.J., Shapiro, H., Stergiopoulos, I., Torriani, S.F., Tu, H., De Vries, R.P., Wiebenga, A., Zwiers, L., Grigoriev, I.V., Kema, G.J. 2011. Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis. PLoS Genetics. Available at: http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002070.

The Draft Genome Sequence of Mycosphaerella fijiensis, the Black Sigatoka Pathogen of Banana - (Abstract Only)

Kema, G., Goodwin, S.B., Van Der Lee, T., Dhillon, B., Arango, R., Crane, C.F., Diaz, C., Souza, M., Carlier, J., Schmutz, J., Grigoriew, I. 2010. The Draft Genome Sequence of Mycosphaerella fijiensis, the Black Sigatoka Pathogen of Banana. Meeting Proceedings.

Development of Simple Sequence Repeat Markers from Expressed Sequence Tags of the Maize Gray Leaf Spot Pathogen, Cercospora Zea-Maydis - (Peer Reviewed Journal)

Dunkle, L.D., Crane, C.F., Goodwin, S.B. 2009. Development of Simple Sequence Repeat Markers from Expressed Sequence Tags of the Maize Gray Leaf Spot Pathogen, Cercospora Zea-Maydis. Molecular Ecology Resources. 9:1375-1379.

Outstanding: the Dispensable Chromosomes of Mycosphaerella Graminicola - (Abstract Only)

M'Barek, S.B., Van Der Lee, T.A., Wittenberg, A.H., Maliepaard, C., Crane, C.F., Dhillon, B., Goodwin, S.B., Schouten, H.J., Kema, G.H. 2009. Outstanding: the Dispensable Chromosomes of Mycosphaerella Graminicola. Fungal Genetics Conference Proceedings. 56:102

Analyses of Expressed Sequence Tags from the Maize Foliar Pathogen Cercospora Zeae-Maydis Identifing Novel Genes expressed during Vegetative, Infectious, & Reproductive Growth - (Peer Reviewed Journal)

Bluhm, B., Dhillon, B., Lindquist, E., Crane, C.F., Kema, G., Goodwin, S.B., Dunkle, L.D. 2008. Analyses of Expressed Sequence Tags from the Maize Foliar Pathogen Cercospora Zeae-maydis Identify Novel Genes Expressed during Vegetative, Infectious, & Reproductive Growth. Biomed Central (BMC) Genomics. 9:523.

Patterned sequence in the transcriptome of vascular plants - (Peer Reviewed Journal)

Crane, C.F. 2007. Patterned sequence in the transcriptome of vascular plants. Biomed Central (BMC) Genomics [abstract]. Paper No. 173.

Characterization of Tandem Repeats and Repetitive Elements in the Genomes of Mycosphaerella graminicola and M. figiensis - (Abstract Only)

Crane, C.F., Quevillon, E., Goodwin, S.B. 2007. Characterization of Tandem Repeats and Repetitive Elements in the Genomes of Mycosphaerella graminicola and M. figiensis. Plant and Animal Genome VX Conference Abstracts. Available: http://www.intl-pag.org/15/abstracts/PAG15_P03b_144.html.

IDENTIFICATION AND GENETIC MAPPING OF HIGHLY POLYMORPHIC MICROSATELLITE LOCI FROM AN EST DATABASE OF THE SEPTORIA TRITICI BLOTCH PATHOGEN MYCOSPHAERELLA GRAMINICOLA - (Peer Reviewed Journal)

Goodwin, S.B., Van Der Lee, T., Cavaletto, J.R., Hekkert, B., Crane, C.F., Kema, G.H. 2006. Identification and genetic mapping of highly polymorphic microsatellite loci from an EST database of the Septoria tritici blotch pathogen Mycosphaerella graminicola. Fungal Genetics and Biology. 44:398-414.

Population Structure of Hessian fly, Mayetiola destructor (Say), in the Southeastern United States - (Abstract Only)

Morton, P.K., Crane, C.F., Schemerhorn, B.J. 2006. Population Structure of Hessian fly, Mayetiola destructor (Say), in the Southeastern United States. International Plant Resistance to Insects Workshop Abstracts & Proceedings. p. 34.

A NEAREST-NEIGHBORING-END ALGORITHM FOR GENETIC MAPPING - (Peer Reviewed Journal)

Crane, C.F., Crane, Y.M. 2005. A nearest-neighboring-end algorithm for genetic mapping. Bioinformatics. 21:1579-1591.

REAL-TIME PCR ANALYSIS OF GENES EXPRESSED DURING WHEAT-MYCOSPHAERELLA GRAMINICOLA INTERACTIONS - (Abstract Only)

Adhikari, T., Balaji, B., Breeden, J.D., Crane, C.F., Anderson, J.M., Goodwin, S.B. 2004. Real-time PCR analysis of genes expressed during wheat-mycosphaerella graminicola interactions. Phytopathology. 94:S2-S3.

A GENETIC MAP OF THE ITMI POPULATION USING THE NEAREST-NEIGHBORING-ENDS ALGORITHM - (Abstract Only) - (23-Apr-04)

FUNCTIONAL PATHOGENOMICS IN CEREALS - (Abstract Only)

Scofield, S.R., Brandt, A.S., Anderson, J.M., Crane, C.F., Goodwin, S.B., Ohm, H., Williams, C.E., Lohret, T., Crasta, O. 2004. Functional pathogenomics in cereals (abstract). Plant Animal and Microbe Genome XII. Abstract No. P839.

FUNCTIONAL PATHOGENOMICS IN CEREALS - (Abstract Only) - (31-Oct-03)

ANALYSIS OF THE WHEAT DEFENSE TRANSCRIPTOME - (Proceedings)

Scofield, S.R., Anderson, J.M., Crane, C.F., Goodwin, S.B., Ohm, H., Williams, C.E., Loret, T., Crasta, O. 2003. Analysis of the wheat defense transcriptome. Proceedings of the Tenth International Wheat Genetics Symposium, Paestum, Italy. 1:407-410.

TRANSCRIPTION PROFILING OF WHEAT DEFENSE RESPONSES: HESSIAN FLY VERSUS MICROBIAL PATHOGENS - (Abstract Only)

Williams, C.E., Goodwin, S.B., Ohm, H.W., Anderson, J.M., Crane, C.F., Scofield, S.R., Lohret, T.A., Crasta, O.R. 2003. Transcription profiling of wheat defense responses: hessian fly versus microbial pathogens. In: Proceedings of the Entomological Society of America Regional Meetings. Entomological Society of American-North Central Branch, March 23-26, 2003, Madison, Wisconsin. Available: http://esa.ent.iastate.edu/confreg/?gridaction=viewonepresentation&year=2003 &presnum=083