Projects

Assessing Water and Nitrogen Use Efficiency in NSGC Core Accessions General Cooperative Agreement (A)   Accession Number: 421078

IMPROVING SUSTAINABILITY OF RAINBOW TROUT PRODUCTION BY INTEGRATED DEVELOPMENT OF IMPROVED GRAINS, FEEDS, AND TROUT Appropriated (D)   Accession Number: 418763

DEVELOPMENT OF POTATO VARIETIES AND GERMPLASM WITH IMPROVED RESISTANCES, PRODUCTION EFFICIENCIES, AND TUBER QUALITIES FOR THE WESTERN U.S. Appropriated (D)   Accession Number: 412111

PLANT AND SEED CHEMISTRY GENETICS Appropriated (D)   Accession Number: 412889

MANAGEMENT OF NATIONAL SMALL GRAINS COLLECTION RESOURCES Appropriated (D)   Accession Number: 413018

SMALL GRAINS GENETICS AND GERMPLASM ENHANCEMENT Appropriated (D)   Accession Number: 413026

Genetic Resource Management of National Small Grains Collection and Associated Information Appropriated (D)   Accession Number: 424394

Analysis of the Biochemical Pathway and Genetics of Seed Phytate in Barley Appropriated (D)   Accession Number: 424520

Genetic Improvement of Barley and Oats for Enhanced Quality and Biotic Stress Resistance Appropriated (D)   Accession Number: 424532

Triticeae Cap Project Reimbursable (R)   Accession Number: 421024

Finding and Deploying Genes Confering Durable Resistance to Barley Stripe Rust Specific Cooperative Agreement (S)   Accession Number: 421082

Assessing Resistance in National Small Grains Collection (NSGC)Accessions to Emerging WHeat Diseases Specific Cooperative Agreement (S)   Accession Number: 418464

Expansion of Oat Expressed Tagged Sequence (EST) Information and Development of Oat Single Nucleotide Polymorphism (SNP) Marker Trust (T)   Accession Number: 415312

Publications (Clicking on the reprint icon will take you to the publication reprint.)

SNP discovery and chromosome anchoring provide the first physically-anchored hexaploid oat map and reveal synteny with model species - (Peer Reviewed Journal)

Oliver, R.E., Tinker, N.A., Lazo, G.R., Chao, S., Jellen, E.N., Carson, M.L., Rines, H.W., Obert, D., Lutz, J.D., Shackelford, I., Korol, A.B., Wight, C., Gardner, K.M., Hattori, J., Beattie, A., Bjornstad, A., Bonman, J.M., Jannink, J., Mitchell Fetch, J.W., Harrison, S., Howarth, C.J., Ibrahim, A., Kolb, F.L., Mcmullen, M.S., Murphy, J.P., Ohm, H., Rossnagel, B.G., Yan, W., Miclaus, K.J., Hiller, J., Maughan, P.J., Redman-Hulse, R.R., Anderson, J.M., Islamovic, E., Jackson, E.W. 2013. SNP discovery and chromosome anchoring provide the first physically-anchored hexaploid oat map and reveal synteny with model species. PLoS One. 8:e58068.

The art of attrition: development of robust oat microsatellites - (Peer Reviewed Journal) - (27-Nov-12)

Genome-wide association analysis in spring wheat identifies QTL associated with resistance to a novel isolate of Pyrenophora tritici-repentis - (Peer Reviewed Journal) - (23-Apr-12)

Field resistance to the Ug99 race group of the stem rust pathogen in spring wheat landraces - (Peer Reviewed Journal) - (21-Apr-12)

Multiple disease resistance to four leaf spot diseases in winter wheat accessions from the USDA National Small Grains Collection - (Peer Reviewed Journal) - (20-Mar-12)

Association mapping of quantitative trait loci responsible for resistance to Bacterial Leaf Streak and Spot Blotch in spring wheat landraces - (Peer Reviewed Journal)

Adhikari, T.B., Gurung, S., Hansen, J., Jackson, E.W., Bonman, J.M. 2012. Association mapping of quantitative trait loci responsible for resistance to Bacterial Leaf Streak and Spot Blotch in spring wheat landraces. The Plant Genome. 5:1-16. doi:10.3835/plantgenome2011.12.0032.

Pathogenic and genetic diversity of Xanthomonas translucens pv. undulosa populations in North Dakota - (Peer Reviewed Journal)

Adhikari, T.B., Gurung, S., Hansen, J.M., Bonman, J.M. 2012. Pathogenic and genetic diversity of Xanthomonas translucens pv. undulosa populations in North Dakota. Phytopathology. Vol. 102, No. 4, 2012.

Identification of novel genomic regions associated with resistance to Pyrenophora tritici-repentis races 1 and 5 in spring wheat landraces using association analysis - (Peer Reviewed Journal)

Gurung, S., Mamid, S., Bonman, J.M., Jackson, E.W., Del Rio, L.E., Acevedo, M., Adhikari, T.B. 2011. Identification of novel genomic regions associated with resistance to Pyrenophora tritici-repentis races 1 and 5 in spring wheat landraces using association analysis. Theoretical and Applied Genetics. 123:1029-1041.

Association mapping of quantitative resistance to phaeosphaeria nodorum in spring wheat landraces from the USDA National Small Grains Collection - (Peer Reviewed Journal)

Adhikari, T., Jackson, E.W., Gurung, S., Hansen, J., Bonman, J.M. 2011. Association mapping of quantitative resistance to phaeosphaeria nodorum in spring wheat landraces from the USDA National Small Grains Collection. Phytopathology. 101(11):1301-1310.

Identification of New Sources of Resistance to Xanthomonas translucens pv. undulosa in Winter Wheat - (Peer Reviewed Journal)

Adhikari, T.B., Hansen, J.M., Gurung, S., Bonman, J.M. 2011. Identification of New Sources of Resistance to Xanthomonas translucens pv. undulosa in Winter Wheat. Plant Disease. PDIS-10-10-0760-RE.R2.

Model SNP development based on the complex oat genome using high-throughput 454 sequencing technology - (Peer Reviewed Journal)

Oliver, R.E., Lazo, G.R., Lutz, J.D., Rubenfield, M.J., Tinker, N.A., Anderson, J.M., Wisniewski-Morehead, N.H., Adhikary, D., Jellen, E.N., Maughan, P.J., Brown Guedira, G.L., Chao, S., Beattie, A.D., Carson, M.L., Rines, H.W., Obert, D.E., Bonman, J.M., Jackson, E.W. 2011. Model SNP development based on the complex oat genome using high-throughput 454 sequencing technology. Biomed Central (BMC) Genomics. 12:77.

Registration of the BISON genetic stocks in Hordeum vulgare L. - (Peer Reviewed Journal)

Verhoeven, E.C., Bonman, J.M., Bregitzer, P.P., Brunick, B., Cooper, B., Corey, A.E., Cuesta-Marcos, A., Filichkina, T., Mundt, C.C., Obert, D.E., Rossnagel, B., Richardson, K.L., Hayes, P.M. 2011. Registration of the BISON genetic stocks in Hordeum vulgare L. Journal of Plant Registrations. 5:135-140.

Inferring geographic origin of barley accessions using molecular markers - (Peer Reviewed Journal)

Bonman, J.M., Gu, Y.Q., Coleman Derr, D., Jackson, E.W., Bockelman, H.E. 2010. Inferring geographic origin of barley accessions using molecular markers. Genetic Resources and Crop Evolution. DOI: 10.1007/s10722-010-9574-4.

Development of oat-based markers from barley and wheat microsatellites. - (Peer Reviewed Journal)

Oliver, R.E., Obert, D.E., Hu, G., Bonman, J.M., O'Leary-Jepsen, E., Jackson, E.W. 2010. Development of oat-based markers from barley and wheat microsatellites. Genome. 53(6): 458–471.

Identification and Validation of Quantitative Trait Loci for Partial Resistance to Crown Rust in Oat. - (Peer Reviewed Journal)

Acevedo, M., Jackson, E.W., Chong, J., Rines, H.W., Harrison, S., Bonman, J.M. 2010. Identification and Validation of Quantitative Trait Loci for Partial Resistance to Crown Rust in Oat. Phytopathology. 100(5):511-521.

An improved method to quantify Puccinia coronata f. sp. avenae DNA in the host Avena sativa. - (Peer Reviewed Journal)

Acevedo, M. , Jackson, E. W. , Sturbaum, A. , Ohm, H. W. and Bonman, J. M.(2010) 'An improved method to quantify Puccinia coronata f. sp. avenae DNA in the host Avena sativa', Canadian Journal of Plant Pathology, 32(2):215-224.

New and Diverse Sources of Multiple Disease Resistnace in Wheat. - (Peer Reviewed Journal)

Gurung, S., Bonman, J.M., Ali, S., Patel, J., Myrfield, M., Mergoum, M., Singh, P.K., Adhikari, T.B. 2009. New and Diverse Sources of Multiple Disease Resistnace in Wheat. Crop Sci. 49:1655-1666

New and Diverse Sources of Multiple Disease Resistance in Wheat - (Peer Reviewed Journal)

Gurung, S., Bonman, J.M., Ali, S., Patel, J., Myrfield, M., Mergoum, M., Singh, P.K., Adhikari, T.B. 2009. New and Diverse Sources of Multiple Disease Resistance in Wheat. Crop Sci. 49:1655-1666.

New DArT markers for oat provide enhanced map coverage and global germplasm characterization - (Peer Reviewed Journal)

Tinker, N.A., Kilian, A., Wright, C.P., Heller-Uszynska, K., Wenzl, P., Rines, H.W., Bjornstad, A., Howarth, C., Jannink, J., Anderson, J.M., Rossnagle, B.G., Stuthman, D.D., Sorrells, M.E., Jackson, E.W., Tuvesson, S., Kolb, F.L., Olsson, O., Federizzi, L.C., Carson, M.L., Ohm, H.W., Molnar, S.J., Scoles, G.J., Eckstein, P.E., Bonman, J.M., Ceplitis, A., Langdon, T. 2009. New DArT markers for oat provide enhanced map coverage and global germplasm characterization. BMC Medical Genetics. 10:39.

New DArT markers for oat provide enhanced map coverage and global germplasm characterization - (Peer Reviewed Journal)

Tinker, N.A., Kilian, A., Rines, H.W., Bjornstad, A., Howarth, C.J., Jannink, J., Anderson, J.M., Rossnagel, B.G., Wight, C.P., Stuthman, D.D., Sorrells, M.E., Scoles, G.J., Eckstein, P.E., Ohm, H.W., Jackson, E.W., Tuvesson, S., Kolb, F.L., Molnar, S.J., Olsson, O., Carson, M.L., Ceplitis, A., Bonman, J.M., Federizzi, L., Langdon, T. 2009. New DArT markers for oat provide enhanced map coverage and global germplasm characterization. Biomed Central (BMC) Genomics. 10(39):1471-2164.

QTLs Affecting a-Tocotrienol, a-Tocopherol, and Total Tocopherol Concentrations Detected in the Ogle/TAM O-301 Oat Mapping Population. - (Peer Reviewed Journal)

Jackson, E.W., Wise, M., Bonman, J.M.,Obert, D.E., Hu, G. and Peterson. D.M.. 2008. QTLs Affecting -tocotrienol, -tocopherol, and total tocopherol concentrations detected in the Ogle/TAM O-301 oat mapping population. Crop Science 48:2141-2152.

A detached leaf method for propagating Puccinia coronata races and assessing crown rust resistance in oat (Avena sativa L.) - (Peer Reviewed Journal)

Jackson, E.W., Obert, D.E., Chong, J., Avant, J., Bonman, J.M. A detached leaf method for propagating Puccinia coronata races and assessing crown rust resistance in oat (Avena sativa L.). Plant Pathology 92:1400-1406

Origin of barley accessions with multiple disease resistance determined by SSR analysis. - (Abstract Only)

Bonman, J.M., Gu, Y., Coleman Derr, D., Jackson, E.W., Chao, S., Bockelman, H.E. 2008. Origin of barley accessions with multiple disease resistance determined by SSR analysis.. International Congress of Plant Pathology Abstracts and Proceedings.

Qualitative and Quantitative trait loci conditioning resistance to Puccinia coronata races NQMG and LGCG in the oat (Avena sativa L.) cultivars Ogle and TAM O-301 - (Peer Reviewed Journal)

Jackson, E.W., Obert, D.E., Hu, G., Menz, M., Bonman, J.M. 2008. Qualitative and Quantitative trait loci conditioning resistance to Puccinia coronata races NQMG and LGCG in the oat (Avena sativa L.) cultivars Ogle and TAM O-301. Theoretical and Applied Genetics.v116:517-527

Field effectiveness of individual genes in the Pc58 crown rust resistance gene complex and subsequent SNP marker development to facilitate utilization - (Abstract Only) - (09-Oct-07)

Alternative approaches for measuring oat crown rust to improve resistance mapping - (Proceedings) - (01-Oct-07)

Geographic Distribution of Stem Rust Resistance in Wheat Landraces - (Peer Reviewed Journal)

Bonman, J.M., Bockelman, H.E., Jin, Y., Hijmans, R.J., Gironella, A. 2007. Geographic Distribution of Stem Rust Resistance in Wheat Landraces. Crop Science. 47:1955-1963.

Disease resistance from the USDA National Small Grains collection -- past, present, and future. - (Abstract Only)

Bonman, J.M., Bockelman, H.E., Goates, B. 2007. Disease resistance from the USDA National Small Grains collection -- past, present, and future.. Phytopathology.

CHARACTERIZATION AND MAPPING OAT CROWN RUST RESISTANCE USING THREE ASSESSMENT METHODS - (Peer Reviewed Journal)

Jackson, E.W., Obert, D.E., Menz, M., Hu, G., Avant, J.B., Chong, J., Bonman, J.M. 2007. Characterization and mapping oat crown rust resistance using three assessment methods. Phytopathology.p.1063-1070

EXPANSION OF PCR-BASED MARKER RESOURCES IN OAT BY SURVEYING GENOMIC-DERIVED SSRs FROM BARLEY AND WHEAT - (Peer Reviewed Journal)

Hu, G., Jackson, E.W., Bonman, J.M. 2007. Expansion of pcr-based marker resources in oat by surveying genomic-derived ssrs from barley and wheat. Agronomy Society of America, Crop Science Society of America, Soil Science Society of America Meeting. Crop Sci. 47:2004-2012 (2007).

ENLARGEMENT OF PCR-BASED MARKER RESOURCES IN OAT BY SURVEYING GENOMIC-DERIVED SSRS FROM BARLEY AND WHEAT - (Abstract Only)

Hu, G., Jackson, E.W., Bonman, J.M. 2006. Enlargement of pcr-based marker resources in oat by surveying genomic-derived ssrs from barley and wheat. American Oat Workers Conference Proceedings. 52

SMALL GRAINS: OLD CROPS WITH NEW USES - (Abstract Only)

Liu, K., Bonman, J.M. 2006. Small grains: old crops with new uses. 97th Annual Meeting and Expo of the American Oil Chemists' Society. (Book of Abstracts).p. 108.

UTILIZATION OF A DETACHED LEAF METHOD FOR CEREAL RUST DISEASE STUDIES. - (Abstract Only)

Jackson, E.W., Chong, J., Avant, J.B., Bonman, J.M. 2006. Utilization of a detached leaf method for cereal rust disease studies.. Phytopathology S881.

GEOGRAPHIC DISTRIBUTION OF COMMON AND DWARF BUNT RESISTANCE IN LANDRACES OF TRITICUM AESTIVUM SUBSP. AESTIVUM - (Peer Reviewed Journal)

Bonman, J.M., Bockelman, H.E., Goates, B., Obert, D.E., Mcguire, P.E., Qualset, C.O., Hijmans, R.J. 2006. Geographic distribution of common and dwarf bunt resistance in landraces of triticum aestivum subsp. aestivum . Crop Science.

ASSESSMENT OF GENETIC VARIATION IN AVENA FATUA BY DNA MARKER PROFILING - (Abstract Only)

Vemulapalli, C., Bonman, J.M., Sharma, G., Soliman, K., Kantety, R. 2006. Assessment of genetic variation in avena fatua by dna marker profiling. Plant Genome Conference Proceedings.

A QUANTITATIVE ASSAY OF PUCCINIA CORONATA F.SP. AVENAE DNA IN AVENA SATIVA. - (Peer Reviewed Journal)

Jackson, E.W., Avant, J.B., Overturf, K.E., Bonman, J.M. 2006. A quantitative assay of puccinia coronata f.sp. avenae dna in avena sativa.. Plant Disease. 90:629-636. DOI:10.1094/PD-90-0629

DEVELOPMENT OF A REAL-TIME POLYMERASE CHAIN REACTION ASSAY TO QUANTIFY PUCCINIA CORONATA F.SP. AVENAE IN AVENA SATIVA - (Abstract Only)

Jackson, E.W., Avant, J.B., Overturf, K.E., Bonman, J.M. 2005. Development of a real-time polymerase chain reaction assay to quantify puccinia coronata f.sp. avenae in avena sativa. American Phytopathology Society. 95 (6):S47

DISEASE AND INSECT RESISTANCE IN CULTIVATED BARLEY ACCESSIONS FROM THE USDA NATIONAL SMALL GRAINS COLLECTION. - (Peer Reviewed Journal)

Bonman, J.M., Bockelman, H.E., Steffenson, B. and Jackson. L. 2005. Disease and insect resistance in cultivated barley accessions from the USDA National Small Grains Collection. Crop Sci. 45:1271-1280.

GIS ANALYSIS OF DISEASE RESISTANT BARLEY LANDRACES - (Proceedings)

Bockelman, H.E., Bonman, J.M. GIS analysis of disease resistant barley landraces. American Society of Agronomy. 2005. Annual Meeting Abstracts No. 3766.

MULTI-LOCATION TESTING TO IDENTIFY OAT GERMPLASM WITH PARTIAL RESISTANCE TO CROWN RUST - (Proceedings)

Bonman, J.M., Barnett, R.D., Chong, M.J., Harrison, S.A., Herrington, R., Jannink, J., Mcmullen, M.S., Obert, D.E., Shaner, G., Stuthman, D.D. Multi-location testing to identify oat germplasm with partial resistance to crown rust. 7th Oat International Conference Proceedings. P. Peltonen-Sainio and m. Topi-Hulmi (eds.) MTT Agrifood Research Finland, Jokioinen, Finland. 2004 .p. 177-178.

BREEDING FOR DURABLE RESISTANCE TO RICE BLAST DISEASE-DREAM OR REALITY? J.M. BONMAN (1) & H. LEUNG (2). (1) USDA-ARS, SMALL GRAINS & POTATO GERMPLASM RESEARCH UNIT, ABERDEEN, ID;(2)INTL RICE RES INSTITUTE, MANILA, PHILLIPINES - (Proceedings)

Bonman, J.M., Leung, H. 2004. Breeding for durable resistance to rice blast disease-dream or reality? j.m. bonman (1) & h. leung (2). (1) usda-ars, small grains & potato germplasm research unit, aberdeen, id;(2)intl rice res institute, manila, phillipines. Phytopathology 93:S113. Publication no. P-2003-0110-SSA. American Phytopathological Society Annual Meeting.

THE 2003 PROCEEDINGS FOR BARLEY IMPROVEMENT CONFERENCE. - (Proceedings)

Bonman, J. M. 2003. Barley research at USDA-Aberdeen. p. 46-53 In: Proceedings of the 34th Annual Barley Improvement Conference. Log # 145986 http://www.ambainc.org/pub/BIC%202003%20Proceedings.pdf