Projects

GENOMICS AND MOLECULAR APPROACHES TO WHEAT TRAITS Appropriated (D)   Accession Number: 413137

Enhancement of Wheat through Genomic and Molecular Approaches Appropriated (D)   Accession Number: 424644

Publications (Clicking on the reprint icon will take you to the publication reprint.)

Systems genetics of environmental response in the mature wheat embryo - (Peer Reviewed Journal)

Munkvold, J.D., Chingcuanco, D.L., Sorrells, M. 2013. Systems genetics of environmental response in the mature wheat embryo. Genetics. doi:10.1534/genetics.113.150052.

Registration of ‘Dy10-DLC’ wheat - (Peer Reviewed Journal)

Chingcuanco, D.L. 2013. Registration of ‘Dy10-DLC’ wheat. Journal of Plant Registrations. doi: 10.3198/jpr2012.08.0019crg.

Isolation and characterization of EMS-induced Dy10 and Ax1 high molecular weight glutenin subunit deficient mutant lines of elite hexaploid wheat (Triticum aestivum L.) cv. Summit - (Peer Reviewed Journal)

Chingcuanco, D.L. 2012. Isolation and characterization of EMS-induced Dy10 and Ax1 high molecular weight glutenin subunit deficient mutant lines of elite hexaploid wheat (Triticum aestivum L.) cv. Summit. Journal of Cereal Science. 56:296-299 doi: 10.1016/j.jcs.2012.06.009.

Genotype dependent burst of transposable element expression in crowns of hexaploid wheat (Triticum aestivum L.) during cold acclimation - (Peer Reviewed Journal)

Chingcuanco, D.L., Fowler, B.D. 2012. Genotype dependent burst of transposable element expression in crowns of hexaploid wheat (Triticum aestivum L.) during cold acclimation. Comparative and Functional Genomics. Available at: http://www.hindawi.com/journals/cfg/2012/232530/. doi:10.1155/2012/232530..

Transcriptome profiling and expression analyses of genes critical to wheat adaptation to low temperature - (Peer Reviewed Journal)

Chingcuanco, D.L., Ganeshan, S., You, F., Fowler, B., Chibbar, R., Mcguire, P., Anderson, O.D. 2011. Transcriptome profiling and expression analyses of genes critical to wheat adaptation to low temperature. Biomed Central (BMC) Genomics. 1:299.

Genome Sequencing and Analysis of the Model Grass Brachypodium Distachyon. - (Peer Reviewed Journal)

Vogel, J.P., Garvin, D.F., Gu, Y.Q., Lazo, G.R., Anderson, O.D., Bragg, J.N., Chingcuanco, D.L., Weng, Y., Belknap, W.R., Thomson, J.G., Dardick, C.D., Baxter, I.R. 2010. Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature. 463:763-768.

Transcriptomic analysis of starch biosynthesis in the developing grain of hexaploid wheat - (Peer Reviewed Journal)

Stamova, B., Chingcuanco, D.L., Beckles, D. 2010. Transcriptomic analysis of starch biosynthesis in the developing grain of hexaploid wheat. International Journal of Plant Genomics. Available at: http://www.hindawi com/journals/ijpg/2009/407426/. doi:10.1155/2009/407426.

Non-Additive Expression of Homoeologous Genes is Established Upon Polyploidization in Hexaploid Wheat - (Peer Reviewed Journal)

Pumphrey, M.O., Bai, J., Chingcuanco, D.L., Anderson, O.D., Gill, B. 2009. Non-Additive Expression of Homoeologous Genes is Established Upon Polyploidization in Hexaploid Wheat. Genetics. 181(3):1147-1157.

Metabolic profiling of transgenic wheat over-expressing the high-molecular weight Dx5 glutenin subunit - (Peer Reviewed Journal)

Stamova, B., Roessner, U., Suren, S., Chingcuanco, D.L., Bacic, A., Beckles, D. 2008. Metabolic profiling of transgenic wheat over-expressing the high-molecular weight Dx5 glutenin subunit. Metabolomics. 5(2):239-252.

GLOBULINS ARE THE MAIN SEED STORAGE PROTEINS IN BRACHYPODIUM DISTACHYON - (Peer Reviewed Journal)

Chingcuanco, D.L., Vensel, W.H. 2008. Globulins are the main seed storage proteins in brachypodium distachyon. Theoretical and Applied Genetics. 117:555-563.

Comparative transcriptional and proteomic profiling of bread wheat cultivar and its derived transgenic line over-expressing a low molecular weight glutenin subunit gene in the endosperm - (Peer Reviewed Journal)

Scossa, F., Chingcuanco, D.L., Anderson, O.D., Vensel, W.H., Lafiandra, D., D'Ovidio, R., Masci, S. 2008. Comparative transcriptional and proteomic profiling of bread wheat cultivar and its derived transgenic line over-expressing a low molecular weight glutenin subunit gene in the endosperm. Molecular and Cellular Proteomics. 8(14):2948-2966.

Expression Profiles of Genes Involved in Fatty Acid and Triacyblycerol Synthesis in Castor Bean (Ricinus communis L.) - (Peer Reviewed Journal)

Chen, G.Q., Turner, C., He, X., Nguyen, T.T., McKeon, T.A., Chingcuanco, D.L. 2007. Expression Profiles of Genes Involved in Fatty Acid and Triacyblycerol Syntheses in Castor Bean (Ricinus communis L.). Lipids. 41:263-274.

TRANSCRIPTIONAL PROFILING OF WHEAT CARYOPSIS DEVELOPMENT USING CDNA MICROARRAYS - (Peer Reviewed Journal)

Chingcuanco, D., Stamova, B., You, F., Lazo, G., Beckles, D., Anderson, O. 2007. Transcriptional profiling of wheat caryopsis development using cDNA microarrays. Plant Molecular Biology. 63:651-668.

ANALYSIS OF THE WHEAT ENDOSPERM TRANSCRIPTOME - (Peer Reviewed Journal)

Chingcuanco, D., Stamova, B., Lazo, G., Cui, X., Anderson, O. 2006. Analysis of the wheat endosperm transcriptome. Journal of Applied Genetics. 47:287-302.

EST SEQUENCING AND PHYLOGENETIC ANALYSIS OF THE MODEL GRASS BRACHYPODIUM DISTACHYON - (Peer Reviewed Journal)

Vogel, J.P., Gu, Y.Q., Twigg, P., Lazo, G.R., Chingcuanco, D.L., Hayden, D.M., Donze, T., Vivia-Lindsay, A., Stamova, B., Coleman-Derr, D. 2006. EST sequencing and phylogenetic analysis of the model grass brachypodium distachyon. Theoretical and Applied Genetics. 113: 186-195.

USE OF A LARGE-SCALE TRITICEAE EST RESOURCE TO REVEAL GENE EXPRESSION PROFILES IN HEXAPLOID WHEAT (TRITICUM AESTIVUM L.) - (Peer Reviewed Journal)

Chao, S., Lazo, G.R., You, F., Crossman, C.C., Hummel, D.D., Lui, N., Laudencia-Chingcuanco, D., Anderson, J.A., Close, T.J., Dubcovsky, J., Gill, B.S., Gill, K.S., Gustafson, J.P., Kianian, S.F., Lapitan, N.L.V., Nguyen, H.T., Sorrells, M.E., McGuire, P.E., Qualset, C.O., Anderson, O.D. 2006. Use of a large-scale Triticeae expressed sequence tag resource to reveal gene expression profiles in hexaploid wheat (Triticum aestivum L.). Genome. 49:531-544 (2006).

SUB-CELLULAR EXPRESSION OF A SPECIES CYTOPLASM SPECIFIC (SCS) GENE IN DIFFERENT STAGES OF WHEAT DEVELOPMENT. - (Abstract Only)

Hossain, K.G., Chingcuanco, D.L., Kalavacharla, V., Riera-Lizarazu, O., Maan, S.S., Gonzalez-Hernandez, J.L., Kianian, S.F. 2005. Sub-cellular expression of a species cytoplasm specific (scs) gene in different stages of wheat development. Proceedings of the Plant & Animal Genome XIII Conference, January 15-19, 2005, San Diego, CA. p. 258.

MICROARRAY ANALYSIS OF TRANSGENIC WHEAT OVER-EXPRESSING A GLUTENIN SUBUNIT RELATED TO TECHNOLOGICAL PROPERTIES. - (Abstract Only)

Scossa, F., Stamova, B., Chingcuanco, D.L., R'Ovidio, R., Anderson, O.D., Lafiandra, D., Masci, S. 2005. Microarray analysis of transgenic wheat over-expressing a glutenin subunit related to technological properties. Proceedings of the Plant & Animal Genome XIII Conference, January 15-19, 2005, San Diego, CA. p. 241.

CONSTRUCTION AND EVALUATION OF CDNA LIBRARIES FOR LARGE SCALE EST SEQUENCING IN WHEAT (TRITICUM AESTIVUM L.) - (Peer Reviewed Journal)

Zhang, D., Choi, D.W., Wanamaker, S., Fenton, R.D., Chin, A., Malatrasi, M., Turuspekov, Y., Walia, H., Akhunov, E., Kianian, P., Otto, C., Simons, K., Deal, K., Echenique, V., Stamova, B., Ross, K., Butler, E., Doherty, L., Verhey, S.D., Johnson, R., Altenbach, S.B., Kothari, K.M., Tanaka, C.K., Shah, M.M., Chingcuanco, D.L., Gitt, M.A., Pham, J., Han, P., Miller, R.E., Crossman, C.C., Chao, S., Lazo, G.R., Klueva, N., Gustafson, J.P., Kianian, S.F., Dubcovsky, J., Walker-Simmons, M.K., Gill, K.S., Dvorak, J., Anderson, O.D., Mcguire, P., Qualset, C.O., Nguyen, H.T., Close, T.J. 2004. Construction and evaluation of cdna libraries for large scale est sequencing in wheat (triticum aestivum l.). Genetics. 168:595-608.

THE USE OF ESTS TO ANALYZE THE SPECTRUM OF WHEAT SEED PROTEINS - (Proceedings)

Anderson, O., Carollo, V., Chao, S., Laudencia-Chingcuanco, D., Lazo, G. 2004. The Use of ESTs to Analyze the Spectrum of Wheat Seed Proteins. Proceedings-8th Gluten Workshop. p. 18-21.