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United States Department of Agriculture

Agricultural Research Service

Comparison of Fluorescent Pseudomonas spp. Genomes
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P. fluorescens

Pf-5

P. aeruginosa

PAO1 a

P. putida

KT2440 a

P. syringae

DC3000 a,b

Size

(base pairs)

7,074,893

6,264,403

6,181,863

6,538,260

G+C content (%)

63.3

66.6

61.6

58.4

Protein-coding genes

 

 

 

 

No. similar to known proteins

3,822

3,021

3,311

3,524

No. similar to proteins of unknown function

890

NA

522

647

No. of conserved hypotheticals d

1,113

769

995

976

No. with no database match e

 

330

 

1,780

 

596

 

628

Total

6,144

5,570

5,420

5,763

Average ORF size (bp)

 

1,021

 

1,005

 

998

 

991

Coding (%)

88.8

89.4

88.0

87.0

rRNA

5

4

7

5

tRNA

71

63

74

63

a  The distribution of ORFs in the P. aeruginosa, P. putida and P. syringae chromosomes are derived from the original annotation. These numbers, particularly hypothetical and conserved hypothetical proteins, may be significantly different with updated blast searches and annotation.

b  The genome information for P. syringae represents combined data from the chromosome and two plasmids.

c  Unknown function, significant sequence similarity to a named protein for which no function is currently attributed.

d  Conserved hypothetical protein, sequence similarity to a translation of another ORF, however no experimental evidence for protein expression exists.

e  Hypothetical protein, no significant similarity to any other sequenced protein.

 

 

 

 Pseudomonas fluorescens Pf-5

 Information on Strain Pf-5

Obtaining Pf-5 Cultures 

 

 

 

 Link to the Genome

Project Investigators 

Useful Links 

 

 

 

 

Contact Us 

 

 

 

 

 

Scientist: Joyce Loper

 

 


Last Modified: 9/30/2010
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